Index

A

abs_correlation() (in module proxi.utils.distance) abs_kendall() (in module proxi.utils.distance) abs_Kendall() (in module proxi.utils.similarity)

abs_pcc() (in module proxi.utils.similarity) abs_spc() (in module proxi.utils.similarity) abs_spearmann() (in module proxi.utils.distance) aggregate_graphs() (in module proxi.utils.misc)

C

create_graph_using_pairwise_metric() (in module proxi.algorithms.pairwise)

D

distance_to_similarity() (in module proxi.utils.similarity)

F

filter_edges_by_votes() (in module proxi.utils.misc)

filter_OTUs_by_name() (in module proxi.utils.process)

G

get_collable_name() (in module proxi.utils.misc) get_graph_object() (in module proxi.utils.misc) get_knn_graph() (in module proxi.algorithms.knng) get_MAD() (in module proxi.utils.process)

get_non_zero_percentage() (in module proxi.utils.process) get_pknn_graph() (in module proxi.algorithms.pknng) get_rn_graph() (in module proxi.algorithms.rng) get_variance() (in module proxi.utils.process)

J

jaccard_graph_similarity() (in module proxi.utils.misc)

N

neg_correlation() (in module proxi.utils.distance)

neg_kendall() (in module proxi.utils.distance) neg_spearmann() (in module proxi.utils.distance)

P

pos_correlation() (in module proxi.utils.distance) pos_kendall() (in module proxi.utils.distance) pos_spearmann() (in module proxi.utils.distance) proxi (module) proxi.algorithms (module) proxi.algorithms.knng (module) proxi.algorithms.pairwise (module)

proxi.algorithms.pknng (module) proxi.algorithms.rng (module) proxi.utils (module) proxi.utils.distance (module) proxi.utils.misc (module) proxi.utils.process (module) proxi.utils.similarity (module)

S

save_graph() (in module proxi.utils.misc)

select_top_OTUs() (in module proxi.utils.process) summarize_graph() (in module proxi.utils.misc)